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Changelog

All notable changes to this project will be documented in this file.

The format is based on Keep a Changelog, and this project adhrees to Semantic Versioning.

v1.0.3 2024-09-19

Added

  • Additional missing dependencies in the CondaPkg.toml and Project.toml file.

    • Libdl
    • Biobase no version -> 2.62.0

  • Step in docs making to generate links for the Changelog.

Fixed

  • Adding the custom registry before instantiate the project in the Dev Container setup

v1.0.2 2024-09-19

Fixed

  • Change the calling of env.jl script from outside of the init function to a normal input in main Module scope.

v1.0.1 - 2024-09-19

Added

  • Compatibility entries for RCall, DataFrames, CondaPkg and MetaGraphs.
  • A step in CI to add the custom registry before instating the dependencies.

Changed

  • The path that points the Conda Environment setup in main.jl

v1.0.0 - 2024-09-18

Added

  • The required functions to get cell type marker genes and to create reference graph in main.jl
  • Configurations and OntologyTrees dependencies
  • A CondaPkg.toml that describes the required dependencies. Also added the env.jl script to resolve the dependencies and update the LocalPreferences.toml file such that RCall understands the R version to use.
  • Since this package is intended to be used in a devcontainer, the postCreateCommand was added to the devcontainer.json file to ensure that the environment is set up correctly.